Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial
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Setup RNA-Seq Pipeline from scratch: fastq (reads) to counts | Step-by-Step Tutorial
This is a detailed workflow tutorial of how to process bulk RNA-Seq reads (fastq) and generate counts matrix which can be used for various downstream analysis. In this video, I walk through setting up a pipeline in bash (linux) and perform steps to process RNA-Seq data including - • Quality control (fastQC) • Trimming (Trimmomatic ...
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